Procedures

Fit function for p_cx_1_2_janev

Inexact equality comparison: x ~= y true if abs(x-y) <= tol else false

Inexact greater than or equal to comparison: x >~= y

Inexact less then or equal to comparison: x <~= y

Calculates an array of total charge exchange cross sections for a Neutral Hydrogen atom in the n=1...n_max states colliding with a ion with charge q at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the n state colliding with a ion with charge q at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the n state colliding with a ion with charge q at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the n state colliding with a ion with charge q at energy eb

Calculates an matrix of the excitation cross sections for a neutral Hydrogen atom transitioning from the n=1..n_max state to the m=1..m_max states due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=1$ state to the $m=2$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=1$ state to the $m=3$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=1$ state to the $m=4$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=1$ state to the $m=5$ state due to a collision an ion with charge q at energy eb

Calculates an array of the excitation cross sections for a neutral Hydrogen atom transitioning from the $n=1$ state to the m=1..m_max states due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=10$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=3$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=4$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=5$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=6$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=7$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=8$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=2$ state to the $m=9$ state due to a collision an ion with charge q at energy eb

Calculates an array of the excitation cross sections for a neutral Hydrogen atom transitioning from the $n=2$ state to the m=1..m_max states due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=10$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=4$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=5$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=6$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=7$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=8$ state due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the $n=3$ state to the $m=9$ state due to a collision an ion with charge q at energy eb

Calculates an array of the excitation cross sections for a neutral Hydrogen atom transitioning from the $n=3$ state to the m=1..m_max states due to a collision an ion with charge q at energy eb

Calculates an array of the excitation cross sections for a neutral Hydrogen atom transitioning from the n state to the m=1..m_max states due to a collision an ion with charge q at energy eb

Calculates an array of the generic excitation cross sections for a neutral Hydrogen atom transitioning from the n state to the m=1..m_max states due to a collision an ion with charge q at energy eb

Calculates the excitation cross section for a neutral Hydrogen atom transitioning from the n$\rightarrow$ m state due to a collision an ion with charge q at energy eb

Calculates an array of total ionization cross sections for a Neutral Hydrogen atom in the n=1...n_max states colliding with a ion with charge q at energy eb

Calculates the total ionization cross section for a Neutral Hydrogen atom in the n state colliding with a ion with charge q at energy eb

Calculates the generic total ionization cross section for a Neutral Hydrogen atom in the n state colliding with a ion with charge q at energy eb

Allows for assigning Profiles,LocalProfiles, EMFields,LocalEMFields,FastIon, NPAParticle, and BirthParticle

Attenuate states along a trajectory

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=1$ state colliding with a fully stripped Boron ion at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=1$ state colliding with a fully stripped Boron ion at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=2$ state colliding with a fully stripped Boron ion at energy eb

Calculates the total ionization cross section for a Neutral Hydrogen atom in the $n=1$ state colliding with a fully stripped Boron ion at energy eb

Balances the matrix so that the rows with zero entries off the diagonal are isolated and the remaining columns and rows are resized to have one norm close to 1.

Reverses the balancing of balance for the eigenvectors

Get beam-beam neutralization/cx rates

Defines how to assign BirthParticle types to eachother

Returns 3 x nb array containing points along the BoundedPlane's boundary edge

Calculates bremsstrahlung

Get beam-target neutralization/cx rates

Calculates the reaction rate coefficients given beam energy eb and target temperature T where the velocity distribution of the target is a Maxwellian

Calculates Maxwellian reaction rate for a beam with atomic mass ab and energy eb firing into a target with atomic mass am and temperature T which has a cross section given by the function fn

Calculates Maxwellian reaction rate for a beam with atomic mass ab, energy eb, and energy level n firing into a target with atomic mass am and temperature T which has a cross section given by the function fn

Calculates Maxwellian reaction rate for a n(\rightarrow)m transition due to a beam with atomic mass ab and energy eb firing into a target with atomic mass am and temperature T which has a cross section given by the function fnm

Calculates Maxwellian reaction rate for a beam with atomic mass ab, energy eb, and energy level n firing into a target with atomic mass am, temperature T, and charge q which has a cross section given by the function fqn

Calculates Maxwellian reaction rate for a n(\rightarrow)m transition due to a beam with atomic mass ab and energy eb firing into a target with atomic mass am, temperature T, and charge q which has a cross section given by the function fqnm

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=1$ state colliding with a fully stripped Carbon ion at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=1$ state colliding with a fully stripped Carbon ion at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=2$ state colliding with a fully stripped Carbon ion at energy eb

Calculates the total charge exchange cross section for a Neutral Hydrogen atom in the $n=3$ state colliding with a fully stripped Carbon ion at energy eb

Calculates the total ionization cross section for a Neutral Hydrogen atom in the $n=1$ state colliding with a fully stripped Carbon ion at energy eb

Calculates normalized vectors that are perpendicular to b such that a x c = b_norm

Calculate charged fusion product count rate and weight function using a fast-ion distribution function F(E,p,r,z)

Checks whether dataset compression is available

Calculates the intersection arclength of a circle with the beam_grid

Calculates cold D-alpha emission

Evolve density of states in time dt via collisional radiative model

Calculates absolute value of a complex number a

Performs complex division c = a / b

Convert sightline position and velocity from cylindrical coordinate rpz to beam coordinate xyz

Calculates the cross product of two vectors: uxv

Calculate cumulative sum

Convert cylindrical coordinate cyl to machine coordinate uvw

Convert cylindrical coordinate cyl to beam coordinate xyz

Calculates total cross section at a given deuterium energy, eb, for the Helium-3 branch of Deuterium-Deutrium nuclear reactions

Calculates total cross section at a given Deuterium energy, eb, for the Tritium branch of Deuterium-Deutrium nuclear reactions

Calculates total cross section at a given Helium 3 energy, eb, for Deuterium-Helium 3 nuclear reactions in the range [0.3-4800 keV]

Calculates total cross section at a given deuterium energy, eb, for Deuterium-Tritium nuclear reactions in the range [0.5-550 keV]

Calculates Direct Charge Exchange (DCX) neutral density and spectra

Calculates DCX emission from user supplied neutrals file

Procedure for finding derivatives from an array

Calculates doppler shift and stark split wavelengths

Calculates a matrix of cross section for a proton-Hydrogen impact excitation transition from the $n=1..n_{max} \rightarrow m=1..m_{max}$ states at energy eb

Calculates cross section for a electron-Hydrogen impact excitation transition from the $n=1$ state to the $m=2$ state at energy eb

Calculates cross section for a electron-Hydrogen impact excitation transition from the $n=1$ state to the $m=3$ state at energy eb

Calculates cross section for a electron-Hydrogen impact excitation transition from the $n=1$ state to the $m=4$ state at energy eb

Calculates cross section for a electron-Hydrogen impact excitation transition from the $n=1$ state to the $m=5$ state at energy eb

Calculates an array of cross sections for a electron-Hydrogen impact excitation transition from the $n=1$ state to the $m=1..m_{max}$ state at energy eb

Calculates cross section for a electron-Hydrogen impact excitation transition from the $n=2$ state to the $m=3$ state at energy eb

Oscillator strength for a n$\rightarrow$ m transition due to electron-Hydrogen impact excitation

Calculates an array of cross sections for a electron-Hydrogen impact excitation transition from the n state to the $m=1..m_{max}$ state at energy eb

Calculates an array of cross sections for a electron-Hydrogen impact excitation transition from the n $\rightarrow$ m state at energy eb

Calculates an array of cross sections for a electron-Hydrogen impact ionization from the $n=1..n_{max}$ states at energy eb

Calculates cross section for a electron-Hydrogen impact ionization from the $n=1$ state at energy eb

Calculates cross section for a electron-Hydrogen impact ionization from the $n=2$ state at energy eb

Calculates cross section for a electron-Hydrogen impact ionization from the $n=3$ state at energy eb

Calculates cross section for a electron-Hydrogen impact ionization from the n state at energy eb

The subroutine eigen determines all eigenvalues and (if desired) all eigenvectors of a real square n * n matrix via the QR method in the version of Martin, Parlett, Peters, Reinsch and Wilkinson.

Transforms the matrix mat to upper Hessenberg form.

Elmtrans copies the Hessenberg matrix stored in mat to h

Defines how to assign FastIon types to eachother

Defines how to add two EMFields types

Defines how to assign EMFields types to eachother

Defines how to subtract two EMFields types

Calculate Active FIDA emission using a Fast-ion distribution function F(E,p,r,z)

Calculate Active FIDA emission using a Monte Carlo Fast-ion distribution

Calculates LOS averaged FIDA weights

Calculates FIDA weights

Defines how to assign a LocalEMFields type to a EMFields type

Initialize NeutralPopulation

Defines how to divide EMFields types by a scalar

Defines how to multiply EMFields types by a scalar

Gets d(d,p)T rate for a beam with energy eb interacting with a target plasma

Gets d(d,p)T anisotropy defecit/enhancement factor for a beam interacting with a target plasma

Gets Guiding Center distribution at position pos or beam_grid indices ind

Get guiding center fast-ion density at given energy and pitch at position pos or beam_grid indices ind

Gets electro-magnetic fields at position pos or beam_grid indices ind

Find closests beam_grid indices ind to position pos

Find closest inter_grid indices ind to position pos

Sets the number of MC markers launched from each beam_grid cell

Sets the number of MC markers launched from each pass_grid cell

Find closest pass_grid indices ind to position pos

Returns fraction of gyroangles that can produce a reaction with given inputs

Gets plasma parameters at position pos or beam_grid indices ind

Returns extrema points where line(s) parametrized by r0 and v0 intersect the plasma boudnary

Get position pos given indices ind

Gets rate matrix for use in colrad

Get probability of a thermal ion charge exchanging with types neutrals

Gets value of sparse array SA at the subscripts subs

Calculates a particles intersection length with the beam_grid

Calculates gyro correction for Guiding Center MC distribution calculation

Calculates mean gyro-radius

Calculates the range(s) of gyro-angles that would land within a bounded plane

Calculates gyro-step

Calculates the surface of all possible trajectories

Calculates the parametric coordinates, u, of point p on the gyro_surface

Calculate particle trajectory for a given gyro-angle and gyro-surface

Write a compressed datasets of 64-bit floats

Write a compressed 64-bit float dataset of dimension 1

Write a compressed 64-bit float dataset of dimension 2

Write a compressed 64-bit float dataset of dimension 3

Write a compressed 64-bit float dataset of dimension 4

Write a compressed 64-bit float dataset of dimension 5

Write a compressed 64-bit float dataset of dimension 6

Write a compressed 64-bit float dataset of dimension 7

Write a compressed dataset of 32-bit integers

Write a compressed 32-bit integer dataset of dimension 1

Write a compressed 32-bit integer dataset of dimension 2

Write a compressed 32-bit integer dataset of dimension 3

Write a compressed 32-bit integer dataset of dimension 4

Write a compressed 32-bit integer dataset of dimension 5

Write a compressed 32-bit integer dataset of dimension 6

Write a compressed 32-bit integer dataset of dimension 7

Write a scalar 64-bit float

Write a scalar 32-bit integer

Calculates halo neutral density and spectra

Calculates halo emission from user supplied neutrals file

Routine to check if a particle will hit a NPA detector

Computes the eigenvalues and (if vec = True) the eigenvectors of an n * n upper Hessenberg matrix.

Computes the eigenvectors for the eigenvalues found in hqr2

Indicator function for determining if a point on a plane is within the plane boundary

Determines if a position pos is in the beam_grid

Indicator function for determining if a point is inside the gyro_surface

Determines if a position pos is in the pass_grid

Indicator subroutine to determine if a position is in a region where the plasma parameter and fields are valid/known

Calculate the subscripts subs into an array with dimensions dims given the corresponding linear index ind

Initialize NeutralPopulation

Initialize reservoir

Performs linear/bilinear/cylindrical interpolation

Calculates interpolation coefficients

Defines how to assign a EMFields type to a LocalEMFields type

Defines how to add two LocalEMFields types

Defines how to assign LocalEMFields types to eachother

Defines how to subtract two LocalEMFields types

Defines how to divide LocalEMFields types by a scalar

Defines how to multiply LocalEMFields types by a scalar

Calculates basis from a line with +x in the direction of line

Calculates the intersection of a line and a cylinder

Calculates the times of intersection of a line and a gyro-surface

Calculates the intersection of a line and a plane

Solve linear equations A * X = B

Defines how to add two LocalProfiles types

Defines how to assign LocalProfiles types to eachother

Defines how to subtract two LocalProfiles types

Defines how to assign a Profiles type to a LocalProfiles type

Defines how to divide LocalProfiles types by a scalar

Defines how to multiply LocalProfiles types by a scalar

Does LU back substitution

Calculates LU decomposition

Spreads the total charge exchange cross section, sigma_tot, among the non-filled m states of sigma according to an exponential

Makes [[libfida:beam_grid] from user defined inputs

Makes [[libfida:pass_grid] from user defined inputs, and stores the quantities in spec_chords and npa_chords

Makes [[libfida:pass_grid] from user defined inputs

Matrix inversion with LU-decomposition

Sample uniformally in beam grid cell

Samples a Guiding Center Fast-ion distribution function at a given beam_grid index

Samples a Guiding Center Fast-ion distribution function at a given pass_grid index

Generate velocity vector from a thermal Maxwellian distribution

Generates a neutral beam particle trajectory

Generates a neutral beam velocity vector that passes through cell at ind with weight weight

Sample uniformally in passive grid cell

Merge NeutralPopulations

Merge reservoir 2 into reservoir 1

Calculates approximate neutral beam emission (full, half, third) from user supplied neutrals file

Calculates neutral beam deposition and spectra

Get probability of a thermal ion charge exchanging with neutral population within cell

Defines how to assign NeutralParticle types to eachother

Calculate neutron emission rate using a fast-ion distribution function F(E,p,r,z)

Calculate neutron flux using a Monte Carlo Fast-ion distribution

Defines how to assign NeutralPopulation to eachother

Calculate Active NPA flux using a fast-ion distribution function F(E,p,r,z)

Calculates range of gyro-angles that would hit the NPA detector

Calculate Active NPA flux using a Monte Carlo fast-ion distribution

Defines how to assign NPAParticle types to eachother

Calculates NPA weights

Defines how to assign NeutralParticleReservoir to eachother

Defines how to assign CFPDTable types to eachother

Allows for multiplying Profiles,LocalProfiles, EMFields, and LocalEMFields by scalars

Allows for adding Profiles,LocalProfiles, EMFields, and LocalEMFields

Allows for subtracting Profiles,LocalProfiles, EMFields, and LocalEMFields

Allows for dividing Profiles,LocalProfiles, EMFields, and LocalEMFields by scalars

Calculates outer product

Calculates a matrix of cross sections for proton-Hydrogen charge exchange interactions from the $n=1..n_{max} \rightarrow m=1..m_{max}$ states at energy Erel

Calculates an array of cross section for proton-Hydrogen charge exchange interactions from the $n=1$ state to m = 1..m_max states at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=1$ state to the $m=1$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=1$ state to the $m=2$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=1$ state to the $m=2$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=1$ state to the $m=3$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=1$ state to the $m=4$ state at energy Erel

Calculates total cross section for proton-Hydrogen charge exchange interactions from the $n=1$ state at energy Erel

Calculates an array of cross sections for proton-Hydrogen charge exchange interactions from the $n=2$ state to m = 1..m_max states at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=2$ state to the $m=2$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=2$ state to the $m=3$ state at energy Erel

Calculates total cross section for proton-Hydrogen charge exchange interactions from the $n=2$ state at energy Erel

Calculates an array of cross sections for proton-Hydrogen charge exchange interactions from the $n=3$ state to m = 1..m_max states at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=3$ state to the $m=2$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=3$ state to the $m=3$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=3$ state to the $m=4$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the $n=3$ state to the $m=5$ state at energy Erel

Calculates total cross section for a proton-Hydrogen charge exchange interaction from the $n=3$ state to $\forall \; m \geq 6$ states at energy Erel

Calculates total cross section for proton-Hydrogen charge exchange interactions from the $n=3$ state at energy Erel

Calculates total cross section for proton-Hydrogen charge exchange interactions from the n state at energy Erel

Calculates an array of cross sections for proton-Hydrogen charge exchange interactions from the n state to m = 1..m_max states at energy Erel

Calculates cross section for proton-Hydrogen charge exchange interactions from the $n \geq 4$ state at energy Erel

Calculates cross section for a proton-Hydrogen charge exchange interaction from the n state to the m state at energy Erel

Calculates a matrix of cross sections for a proton-Hydrogen impact excitation transitions from the $n=1..n_{max} \rightarrow m=1..m_{max}$ states at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=1$ state to the $m=2$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=1$ state to the $m=3$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=1$ state to the $m=4$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=1$ state to the $m=5$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=1$ state to the $m=6$ state at energy eb

Calculates an array of cross sections for a proton-Hydrogen impact excitation transitions from the $n=1$ state to the $m=1..{m_max}$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=10$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=3$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=4$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=5$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=6$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=7$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=8$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=2$ state to the $m=9$ state at energy eb

Calculates an array of cross sections for a proton-Hydrogen impact excitation transitions from the $n=2$ state to the $m=1..{m_max}$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=10$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=4$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=5$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=6$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=7$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=8$ state at energy eb

Calculates cross section for a proton-Hydrogen impact excitation transition from the $n=3$ state to the $m=9$ state at energy eb

Calculates an array of cross sections for proton-Hydrogen impact excitation transitions from the $n=3$ state to the $m=1..{m_max}$ state at energy eb

Calculates an array of cross sections for a proton-Hydrogen impact excitation transitions from the n state to the $m=1..{m_max}$ state at energy eb

Calculates the cross section for a proton-Hydrogen impact excitation transition from the n state to the m state at energy eb

Calculates an array of cross sections for proton-Hydrogen impact ionization interactions from the n = 1..n_max state at energy eb

Calculates cross section for a proton-Hydrogen impact ionization interaction from the $n=1$ state at energy eb

Calculates cross section for a proton-Hydrogen impact ionization interaction from the $n=2$ state at energy eb

Calculates cross section for a proton-Hydrogen impact ionization interaction from the $n=3$ state at energy eb

Calculates cross section for a proton-Hydrogen impact ionization interaction from the $n=4$ state at energy eb

Calculates cross section for a proton-Hydrogen impact ionization interaction from the $n=5$ state at energy eb

Calculates cross section for a proton-Hydrogen impact ionization interaction from the nth state at energy eb

Update neutral population

Merge neutral particle reservoirs across MPI processes

Calculate Passive FIDA emission using a Fast-ion distribution function F(E,p,r,z)

Calculate Passive FIDA emission using a Monte Carlo Fast-ion distribution

Calculates velocity vector from pitch, gyroangle and fields

Calculates basis from 3 points on a plane with +z being the plane normal

Defines how to assign a LocalProfiles type to a Profiles type

Calculate Passive NPA flux using a fast-ion distribution function F(E,p,r,z)

Calculate Passive NPA flux using a Monte Carlo fast-ion distribution

Defines how to add two Profiles types

Defines how to assign Profiles types to eachother

Defines how to subtract two Profiles types

Prints FIDASIM banner

Prints out the default settings as a namelist

Defines how to divide Profiles types by a scalar

Defines how to multiply Profiles types by a scalar

Checks whether quasi-neutrality is satisfied to some tol

Procedure for generating a random array index/subscripts

Procedure for generating a random array index/subscripts

Reads in a cross section table from file and puts it into a AtomicCrossSection type

Reads in a atomic rate table from file and puts it into a AtomicRates type

Reads in a atomic transitions table from file and puts it into a AtomicTransitions type

Reads neutral beam geometry and stores the quantities in nbi

Reads the CFPD geometry and stores the quantities in ctable

Reads the spectral geometry and stores the quantities in spec_chords

Reads in the fast-ion distribution

Reads in the interpolation grid, plasma parameters, and fields and stores the quantities in inter_grid and equil

Reads in the fast-ion distribution function and stores the quantities in fbm

Reads input namelist file and stores the results into inputs, nbi, and beam_grid 20 for suffixes and seperators e.g. /, _npa.h5, ...

Reads in a MC particle fast-ion distribution and puts them in particles

Reads neutral population from file

Reads neutral populations from file and puts it in neut

Reads the NPA geometry and stores the quantities in npa_chords

Reads in a nuclear reaction rates table from file and puts it into a NuclearRates type

Reads in Plasma composition e.g. the thermal, fast-ion, and impurity species

Reads in atomic tables from file and stores them in tables

Procedure to initialize a random number generator with a seed. If seed is negative then random seed is used

Generate a normally-distributed random number with mean 0 and standard deviation 1

Generates random 32-bit integer seed from /dev/urandom

Generate a uniformally-distributed random number in the range [0,1)

Swaps values a and b

Defines how to multiply EMFields types by a scalar

Performs 1D integration using Simpsons rule

Defines how to multiply LocalEMFields types by a scalar

Defines how to multiply LocalProfiles types by a scalar

Defines how to multiply Profiles types by a scalar

Creates a sparse array from a dense array

Calculates doppler shift, stark splitting, and intensities

Store birth particles/density in birth

Store fida photons in Spectra

Store FIDA weight photons in fweight

Store FIDA weight photons in fweight for a specific channel

Store BES photons in Spectra

Store neutron rate in neutron

Store NPA particles in npa

Store neutral birth location of the photon source

Store photons in spectra

Calculates the linear index of an array with dimensions dims and subcripts subs

Swap arrays a and b

Creates active rotation matrix for z-y'-x" rotation given Tait-Bryan angles

Returns time string

Computes the path of a neutral through the beam_grid

Computes the path of a neutral through the pass_grid

Update [NeutralPopulation]] pop at ind

Store neutrals in reservoir

Convert machine coordinate uvw to cylindrical coordinate cyl

Convert machine coordinate uvw to beam coordinate xyz

Write Deuterium-Deuterium interaction cross sections to a HDF5 file

Write Deuterium-Helium3 interaction cross sections to a HDF5 file

Write Deuterium-Tritium interaction cross sections to a HDF5 file

Write Hydrogen-Impurity interaction cross sections to a HDF5 file

Write Hydrogen-Electron interaction cross sections to a HDF5 file

Write Hydrogen-Hydrogen interaction cross sections to a HDF5 file

Write beam_grid to an HDF5 file

Writes birth to a HDF5 file

Write Deuterium-Deuterium reaction rates to a HDF5 file

Write Deuterium-Helium3 reaction rates to a HDF5 file

Write Deuterium-Tritium reaction rates to a HDF5 file

Write Hydrogen-Impurity reaction rates to a HDF5 file

Write Hydrogen-Electron reaction rates to a HDF5 file

Write Hydrogen-Hydrogen reaction rates to a HDF5 file

Writes cfpd to a HDF5 file

Write Einstein coefficients to HDF5 file

Writes fweight to a HDF5 file

Writes Neutral Population to HDF5 group

Writes neut to a HDF5 file

Writes neutron to a HDF5 file

Writes npa to a HDF5 file

Writes nweight to a HDF5 file

Writes Spectra to a HDF5 file

Convert beam coordinate xyz to cylindrical coordinate cyl

Convert beam coordinate xyz to machine coordinate uvw