write_neutrals Subroutine

  1. fidasim.f90
  2. libfida
  3. write_neutrals

public subroutine write_neutrals()

Writes neut to a HDF5 file

Arguments

None

Calls

proc~~write_neutrals~~CallsGraph proc~write_neutrals write_neutrals proc~write_beam_grid write_beam_grid proc~write_neutrals->proc~write_beam_grid proc~write_neutral_population write_neutral_population proc~write_neutrals->proc~write_neutral_population h5gcreate_f h5gcreate_f proc~write_neutrals->h5gcreate_f h5fcreate_f h5fcreate_f proc~write_neutrals->h5fcreate_f h5open_f h5open_f proc~write_neutrals->h5open_f h5fclose_f h5fclose_f proc~write_neutrals->h5fclose_f h5gclose_f h5gclose_f proc~write_neutrals->h5gclose_f h5close_f h5close_f proc~write_neutrals->h5close_f h5ltset_attribute_string_f h5ltset_attribute_string_f proc~write_neutrals->h5ltset_attribute_string_f proc~write_beam_grid->h5gcreate_f proc~write_beam_grid->h5gclose_f proc~write_beam_grid->h5ltset_attribute_string_f interface~h5ltmake_compressed_dataset_double_f h5ltmake_compressed_dataset_double_f proc~write_beam_grid->interface~h5ltmake_compressed_dataset_double_f h5ltmake_dataset_int_f h5ltmake_dataset_int_f proc~write_beam_grid->h5ltmake_dataset_int_f proc~xyz_to_uvw xyz_to_uvw proc~write_beam_grid->proc~xyz_to_uvw proc~write_neutral_population->h5gcreate_f proc~write_neutral_population->h5gclose_f proc~write_neutral_population->h5ltset_attribute_string_f proc~write_neutral_population->interface~h5ltmake_compressed_dataset_double_f interface~h5ltmake_compressed_dataset_int_f h5ltmake_compressed_dataset_int_f proc~write_neutral_population->interface~h5ltmake_compressed_dataset_int_f proc~write_neutral_population->h5ltmake_dataset_int_f proc~ind2sub ind2sub proc~write_neutral_population->proc~ind2sub proc~h5ltmake_compressed_dataset_double_f_4 h5ltmake_compressed_dataset_double_f_4 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_4 proc~h5ltmake_compressed_dataset_double_f_2 h5ltmake_compressed_dataset_double_f_2 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_2 proc~h5ltmake_compressed_dataset_double_f_1 h5ltmake_compressed_dataset_double_f_1 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_1 proc~h5ltmake_compressed_dataset_double_f_5 h5ltmake_compressed_dataset_double_f_5 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_5 proc~h5ltmake_compressed_dataset_double_f_3 h5ltmake_compressed_dataset_double_f_3 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_3 proc~h5ltmake_compressed_dataset_double_f_6 h5ltmake_compressed_dataset_double_f_6 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_6 proc~h5ltmake_compressed_dataset_double_f_7 h5ltmake_compressed_dataset_double_f_7 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_7 proc~h5ltmake_compressed_dataset_int_f_1 h5ltmake_compressed_dataset_int_f_1 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_1 proc~h5ltmake_compressed_dataset_int_f_2 h5ltmake_compressed_dataset_int_f_2 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_2 proc~h5ltmake_compressed_dataset_int_f_3 h5ltmake_compressed_dataset_int_f_3 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_3 proc~h5ltmake_compressed_dataset_int_f_5 h5ltmake_compressed_dataset_int_f_5 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_5 proc~h5ltmake_compressed_dataset_int_f_4 h5ltmake_compressed_dataset_int_f_4 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_4 proc~h5ltmake_compressed_dataset_int_f_6 h5ltmake_compressed_dataset_int_f_6 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_6 proc~h5ltmake_compressed_dataset_int_f_7 h5ltmake_compressed_dataset_int_f_7 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_7 proc~chunk_size chunk_size proc~h5ltmake_compressed_dataset_double_f_4->proc~chunk_size h5sclose_f h5sclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5sclose_f h5ltmake_dataset_double_f h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_4->h5ltmake_dataset_double_f h5pset_chunk_f h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_chunk_f h5pcreate_f h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_4->h5pcreate_f h5pset_shuffle_f h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_shuffle_f h5pset_deflate_f h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_deflate_f h5dcreate_f h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_4->h5dcreate_f h5dwrite_f h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_4->h5dwrite_f h5dclose_f h5dclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5dclose_f h5pclose_f h5pclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5pclose_f h5screate_simple_f h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_4->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_1->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_1->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_1->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_1->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_1->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_1->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_1->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_1->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_1->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_1->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_1->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_1->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_2->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_2->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_2->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_2->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_2->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_2->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_2->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_2->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_2->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_2->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_2->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_2->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_2->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_2->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_2->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_2->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_2->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_2->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_3->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_3->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_3->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_3->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_3->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_3->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_3->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_3->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_3->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_3->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_3->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_3->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_1->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_1->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_1->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_1->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_1->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_1->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_5->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_5->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_5->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_5->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_5->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_5->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_3->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_3->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_3->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_3->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_3->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_3->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_5->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_5->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_5->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_5->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_5->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_5->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_5->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_5->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_5->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_5->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_5->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_5->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_4->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_4->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_4->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_4->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_4->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_4->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_4->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_4->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_4->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_4->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_4->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_4->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_6->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_6->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_6->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_6->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_6->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_6->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_6->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_6->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_6->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_6->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_6->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_6->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_7->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_7->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_7->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_7->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_7->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_7->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_7->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_7->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_7->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_7->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_7->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_7->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_6->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_6->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_6->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_6->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_6->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_6->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_7->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_7->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_7->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_7->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_7->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_7->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5screate_simple_f

Called by

proc~~write_neutrals~~CalledByGraph proc~write_neutrals write_neutrals program~fidasim fidasim program~fidasim->proc~write_neutrals

Contents

Source Code

write_neutrals

Source Code

subroutine write_neutrals
    !+ Writes [[libfida:neut]] to a HDF5 file
    integer(HID_T) :: fid, gid
    integer :: error

    integer :: i
    character(charlim) :: filename
    integer(HSIZE_T), dimension(4) :: dims4

    dims4 = [nlevs, beam_grid%nx, beam_grid%ny, beam_grid%nz]

    filename=trim(adjustl(inputs%result_dir))//"/"//trim(adjustl(inputs%runid))//"_neutrals.h5"

    !Open HDF5 interface
    call h5open_f(error)

    !Create file overwriting any existing file
    call h5fcreate_f(filename, H5F_ACC_TRUNC_F, fid, error)

    !Write variables
    call write_beam_grid(fid, error)

    if(inputs%calc_nbi_dens.ge.1) then
        call h5gcreate_f(fid, "/full", gid, error)
        call write_neutral_population(gid, neut%full, error)
        call h5gclose_f(gid, error)
        call h5ltset_attribute_string_f(fid,"/full","description", &
             "Full Energy Neutral Population", error)

        call h5gcreate_f(fid, "/half", gid, error)
        call write_neutral_population(gid, neut%half, error)
        call h5gclose_f(gid, error)
        call h5ltset_attribute_string_f(fid,"/half","description", &
             "Half Energy Neutral Population", error)

        call h5gcreate_f(fid, "/third", gid, error)
        call write_neutral_population(gid, neut%third, error)
        call h5gclose_f(gid, error)
        call h5ltset_attribute_string_f(fid,"/third","description", &
             "Third Energy Neutral Population", error)
    endif

    if(inputs%calc_dcx_dens.ge.1) then
        call h5gcreate_f(fid, "/dcx", gid, error)
        call write_neutral_population(gid, neut%dcx, error)
        call h5gclose_f(gid, error)
        call h5ltset_attribute_string_f(fid,"/dcx","description", &
             "Direct Charge Exchange (DCX) Neutral Population", error)
    endif

    if(inputs%calc_halo_dens.ge.1) then
        call h5gcreate_f(fid, "/halo", gid, error)
        call write_neutral_population(gid, neut%halo, error)
        call h5gclose_f(gid, error)
        call h5ltset_attribute_string_f(fid,"/halo","description", &
             "Thermal Halo Neutral Population", error)
    endif

    call h5ltset_attribute_string_f(fid, "/", "version", version, error)
    call h5ltset_attribute_string_f(fid,"/","description", &
         "Neutral Populations calculated by FIDASIM", error)

    !Close file
    call h5fclose_f(fid, error)

    !Close HDF5 interface
    call h5close_f(error)

    if(inputs%verbose.ge.1) then
        write(*,'(T4,a,a)') 'neutral populations written to: ',trim(filename)
    endif

end subroutine write_neutrals