Source Files

Calculates intersection length of a ray and an axis aligned bounding box (AABB)

This file contains the routines for calculating atomic cross sections and reaction rates for FIDASIM

Calculates settings for a grid that aligns with the neutral beam.

Generates charged fusion product table

Checks if neutral beam geometry structure is valid

Checks if cfpd geometry structure is valid

Checks if distribution structure is valid

Checks if electromagnetic fields structure is valid

Checks if interpolation grid structure is valid

Checks if input structure is valid

Checks if NPA geometry structure is valid

Checks if plasma paramters structure is valid

Check if spectral geometry structure is valid

Check structure s is formatted according to schema

Creates a COCOS structure from a given index

Creates colored string

Converts a GEQDSK structure according to cc_in --> cc_out Reference: O. Sauter and S. Yu. Medvedev, Tokamak Coordinate Conventions: COCOS, Computer Physics Communications 184, 293 (2013).

Defines charged fusion product diagnostic geometry Sources: detector_aperture_geometry.dat and MAST_29908_221_g_ensemble.nml NOTE: This file is hardcoded to be useful for developers. General users could modify parameters under wn = 0 or 1, and correspondingly set the wn flag when calling detector_aperture_geometry.pro Alternatively, the user could manually define the geometry, see run_tests.pro and test_cfpd.pro

This file contains all the linear algebra routines FIDASIM uses

Print a error message

Extracts plasma structure from a TRANSP run

This file contains the main routines for FIDASIM 3.0.0-dev

Gets FIDASIM install directory

Gets FIDASIM version number from git. Falls back to reading VERSION file when git is not available

This file contains HDF5 helper routines for writing compressed data files

Identifies the cocos index of a GEQDSK dictionary object Reference: O. Sauter and S. Ty. Medvedev, Tokamak Coordinate Conventions: COCOS, Computer Physics Communications 184, 293 (2013).

Calculates whether a given r,z is within the vessel

Print a informational message

Calculates basis from a line with +x in the direction of line

Calculates the FIDASIM beam geometry from the beam geometry variables in the TRANSP/NUBEAM namelist

Generates 2D array of n cartesian points in (x,y) that are approximately uniformly spaced

Plots charged fusion product orbit trajectories

Checks FIDASIM inputs and writes FIDASIM input files

This file contains the source code for PREFIDA

Reads an EFIT GEQDSK file

Reads HDF5 file variables and attributes

Reads a JSON file that can have YAML like comments

Reads guiding center Monte Carlo NUBEAM fast-ion distribution file

Reads a flat NetCDF file

If the input string variable is equal to one of IDL's reserved words, replace it with a similar name with an underscore at the end.

Reads NUBEAM fast-ion distribution function

This file contains the procedure to read SPIRAL fast-ion distribution file

Creates interpolation grid

Converts an IDL save file to a HDF5 file

Returns the source file of the routine name If name is not given then it returns the source file of caller routine

Print a success message

Calculates Tait-Bryan z-y'-x" active rotation matrix given rotation angles alpha,beta,gamma in radians

Creates a tiled matrix out of an array or matrix

This file contains routines for parallel random number generation and a basic sparse array implementation

This file contains useful FIDASIM utilities

Express non-rotated coordinate uvw in rotated xyz coordinates

Creates a structure containing the variables in the callers scope

Print a warning message

Write fast-ion distribution to a HDF5 file

Write MHD equilibrium values to a HDF5 file

Write geometry values to a HDF5 file

Writes HDF5 files from variables in the local scope or a structure

Writes namelist file

Writes variables in the local scope to a NetCDF file

Express rotated coordinate xyz in non-rotated uvw coordinates