Source Files

FileDescription
__init__.py
aabb_intersect.pro

Calculates intersection length of a ray and an axis aligned bounding box (AABB)

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atomic_tables.f90

This file contains the routines for calculating atomic cross sections and reaction rates for FIDASIM

beam_grid.pro

Calculates settings for a grid that aligns with the neutral beam.

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check_beam.pro

Checks if neutral beam geometry structure is valid

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check_distribution.pro

Checks if distribution structure is valid

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check_fields.pro

Checks if electromagnetic fields structure is valid

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check_grid.pro

Checks if interpolation grid structure is valid

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check_inputs.pro

Checks if input structure is valid

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check_npa.pro

Checks if NPA geometry structure is valid

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check_plasma.pro

Checks if plasma paramters structure is valid

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check_spec.pro

Check if spectral geometry structure is valid

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check_struct_schema.pro

Check structure s is formatted according to schema

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colored.pro

Creates colored string

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eigensystem.f90

This file contains all the linear algebra routines FIDASIM uses

error.pro

Print a error message

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extract_transp_plasma.pro

Extracts plasma structure from a TRANSP run

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fidasim.f90

This file contains the main routines for FIDASIM 1.3.4

get_fidasim_dir.pro

Gets FIDASIM install directory

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get_version.pro

Gets FIDASIM version number from git. Falls back to reading VERSION file when git is not available

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hdf5_extra.f90

This file contains HDF5 helper routines for writing compressed data files

info.pro

Print a informational message

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line_basis.pro

Calculates basis from a line with +x in the direction of line

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nubeam_geometry.pro

Calculates the FIDASIM beam geometry from the beam geometry variables in the TRANSP/NUBEAM namelist

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prefida.pro

Checks FIDASIM inputs and writes FIDASIM input files

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preprocessing.py

This file contains the source code for PREFIDA

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read_geqdsk.pro

Reads an EFIT GEQDSK file

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read_hdf5.pro

Reads HDF5 file variables and attributes

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read_json.pro

Reads a JSON file that can have YAML like comments

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read_mc_nubeam.pro

Reads guiding center Monte Carlo NUBEAM fast-ion distribution file

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read_ncdf.pro

Reads a flat NetCDF file

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read_nubeam.pro

Reads NUBEAM fast-ion distribution function

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read_spiral.pro

This file contains the procedure to read SPIRAL fast-ion distribution file

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rz_grid.pro

Creates interpolation grid

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sav_to_hdf5.pro

Converts an IDL save file to a HDF5 file

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source_file.pro

Returns the source file of the routine name If name is not given then it returns the source file of caller routine

success.pro

Print a success message

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tb_zyx.pro

Calculates Tait-Bryan z-y'-x" active rotation matrix given rotation angles alpha,beta,gamma in radians

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tile_array.pro

Creates a tiled matrix out of an array or matrix

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utilities.f90

This file contains routines for parallel random number generation and a basic sparse array implementation

utils.py

This file contains useful FIDASIM utilities

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uvw_to_xyz.pro

Express non-rotated coordinate uvw in rotated xyz coordinates

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vars_to_struct.pro

Creates a structure containing the variables in the callers scope

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warn.pro

Print a warning message

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write_distribution.pro

Write fast-ion distribution to a HDF5 file

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write_equilibrium.pro

Write MHD equilibrium values to a HDF5 file

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write_geometry.pro

Write geometry values to a HDF5 file

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write_hdf5.pro

Writes HDF5 files from variables in the local scope or a structure

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write_namelist.pro

Writes namelist file

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write_ncdf.pro

Writes variables in the local scope to a NetCDF file

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xyz_to_uvw.pro

Express rotated coordinate xyz in non-rotated uvw coordinates

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file~~graph~~FileGraph sourcefile~utilities.f90 utilities.f90 sourcefile~fidasim.f90 fidasim.f90 sourcefile~utilities.f90->sourcefile~fidasim.f90 sourcefile~atomic_tables.f90 atomic_tables.f90 sourcefile~hdf5_extra.f90 hdf5_extra.f90 sourcefile~hdf5_extra.f90->sourcefile~fidasim.f90 sourcefile~hdf5_extra.f90->sourcefile~atomic_tables.f90 sourcefile~eigensystem.f90 eigensystem.f90 sourcefile~eigensystem.f90->sourcefile~fidasim.f90
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