write_birth_profile Subroutine

  1. fidasim.f90
  2. libfida
  3. write_birth_profile

public subroutine write_birth_profile()

Writes birth to a HDF5 file

Arguments

None

Calls

proc~~write_birth_profile~~CallsGraph proc~write_birth_profile write_birth_profile h5ltmake_dataset_int_f h5ltmake_dataset_int_f proc~write_birth_profile->h5ltmake_dataset_int_f proc~write_beam_grid write_beam_grid proc~write_birth_profile->proc~write_beam_grid interface~h5ltmake_compressed_dataset_int_f h5ltmake_compressed_dataset_int_f proc~write_birth_profile->interface~h5ltmake_compressed_dataset_int_f h5open_f h5open_f proc~write_birth_profile->h5open_f h5ltset_attribute_string_f h5ltset_attribute_string_f proc~write_birth_profile->h5ltset_attribute_string_f h5fcreate_f h5fcreate_f proc~write_birth_profile->h5fcreate_f h5close_f h5close_f proc~write_birth_profile->h5close_f interface~h5ltmake_compressed_dataset_double_f h5ltmake_compressed_dataset_double_f proc~write_birth_profile->interface~h5ltmake_compressed_dataset_double_f h5fclose_f h5fclose_f proc~write_birth_profile->h5fclose_f proc~xyz_to_uvw xyz_to_uvw proc~write_birth_profile->proc~xyz_to_uvw proc~write_beam_grid->h5ltset_attribute_string_f proc~write_beam_grid->interface~h5ltmake_compressed_dataset_double_f proc~write_beam_grid->proc~xyz_to_uvw h5gclose_f h5gclose_f proc~write_beam_grid->h5gclose_f h5gcreate_f h5gcreate_f proc~write_beam_grid->h5gcreate_f proc~h5ltmake_compressed_dataset_int_f_6 h5ltmake_compressed_dataset_int_f_6 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_6 proc~h5ltmake_compressed_dataset_int_f_2 h5ltmake_compressed_dataset_int_f_2 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_2 proc~h5ltmake_compressed_dataset_int_f_3 h5ltmake_compressed_dataset_int_f_3 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_3 proc~h5ltmake_compressed_dataset_int_f_1 h5ltmake_compressed_dataset_int_f_1 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_1 proc~h5ltmake_compressed_dataset_int_f_7 h5ltmake_compressed_dataset_int_f_7 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_7 proc~h5ltmake_compressed_dataset_int_f_4 h5ltmake_compressed_dataset_int_f_4 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_4 proc~h5ltmake_compressed_dataset_int_f_5 h5ltmake_compressed_dataset_int_f_5 interface~h5ltmake_compressed_dataset_int_f->proc~h5ltmake_compressed_dataset_int_f_5 proc~h5ltmake_compressed_dataset_double_f_7 h5ltmake_compressed_dataset_double_f_7 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_7 proc~h5ltmake_compressed_dataset_double_f_6 h5ltmake_compressed_dataset_double_f_6 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_6 proc~h5ltmake_compressed_dataset_double_f_5 h5ltmake_compressed_dataset_double_f_5 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_5 proc~h5ltmake_compressed_dataset_double_f_4 h5ltmake_compressed_dataset_double_f_4 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_4 proc~h5ltmake_compressed_dataset_double_f_3 h5ltmake_compressed_dataset_double_f_3 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_3 proc~h5ltmake_compressed_dataset_double_f_2 h5ltmake_compressed_dataset_double_f_2 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_2 proc~h5ltmake_compressed_dataset_double_f_1 h5ltmake_compressed_dataset_double_f_1 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_1 proc~h5ltmake_compressed_dataset_int_f_6->h5ltmake_dataset_int_f h5dwrite_f h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_6->h5dwrite_f h5dclose_f h5dclose_f proc~h5ltmake_compressed_dataset_int_f_6->h5dclose_f h5sclose_f h5sclose_f proc~h5ltmake_compressed_dataset_int_f_6->h5sclose_f h5pset_chunk_f h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_6->h5pset_chunk_f h5pcreate_f h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_6->h5pcreate_f proc~chunk_size chunk_size proc~h5ltmake_compressed_dataset_int_f_6->proc~chunk_size h5pset_deflate_f h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_6->h5pset_deflate_f h5pset_shuffle_f h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_6->h5pset_shuffle_f h5screate_simple_f h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_6->h5screate_simple_f h5pclose_f h5pclose_f proc~h5ltmake_compressed_dataset_int_f_6->h5pclose_f h5dcreate_f h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_6->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_7->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_7->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5sclose_f h5ltmake_dataset_double_f h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_7->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_7->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_7->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_7->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_7->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_7->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_6->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_6->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_6->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_6->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_6->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_6->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_6->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_5->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_5->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_5->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_5->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_5->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_5->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_5->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_4->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_4->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_4->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_4->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_4->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_4->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_4->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_3->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_3->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_3->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_3->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_3->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_3->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_3->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_2->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_2->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_2->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_2->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_2->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_2->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_2->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_1->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_1->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_1->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_1->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_1->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_1->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_1->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_2->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_2->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_2->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_2->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_2->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_2->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_2->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_2->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_2->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_2->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_2->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_2->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_3->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_3->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_3->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_3->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_3->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_3->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_3->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_3->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_3->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_3->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_3->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_3->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_1->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_1->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_1->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_1->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_1->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_1->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_1->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_1->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_1->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_1->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_1->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_1->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_7->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_7->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_7->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_7->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_7->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_7->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_7->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_7->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_7->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_7->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_7->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_7->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_4->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_4->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_4->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_4->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_4->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_4->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_4->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_4->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_4->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_4->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_4->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_4->h5dcreate_f proc~h5ltmake_compressed_dataset_int_f_5->h5ltmake_dataset_int_f proc~h5ltmake_compressed_dataset_int_f_5->h5dwrite_f proc~h5ltmake_compressed_dataset_int_f_5->h5dclose_f proc~h5ltmake_compressed_dataset_int_f_5->h5sclose_f proc~h5ltmake_compressed_dataset_int_f_5->h5pset_chunk_f proc~h5ltmake_compressed_dataset_int_f_5->h5pcreate_f proc~h5ltmake_compressed_dataset_int_f_5->proc~chunk_size proc~h5ltmake_compressed_dataset_int_f_5->h5pset_deflate_f proc~h5ltmake_compressed_dataset_int_f_5->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_int_f_5->h5screate_simple_f proc~h5ltmake_compressed_dataset_int_f_5->h5pclose_f proc~h5ltmake_compressed_dataset_int_f_5->h5dcreate_f

Called by

proc~~write_birth_profile~~CalledByGraph proc~write_birth_profile write_birth_profile program~fidasim fidasim program~fidasim->proc~write_birth_profile

Contents

Source Code

write_birth_profile

Source Code

subroutine write_birth_profile
    !+ Writes [[libfida:birth]] to a HDF5 file
    integer(HID_T) :: fid
    integer(HSIZE_T), dimension(4) :: dim4
    integer(HSIZE_T), dimension(2) :: dim2
    integer(HSIZE_T), dimension(1) :: d
    integer :: error, i, npart

    character(charlim) :: filename
    real(Float64), dimension(:,:), allocatable :: ri
    real(Float64), dimension(:,:), allocatable :: vi
    real(Float64), dimension(3) :: xyz,uvw,v_uvw


    npart = birth%cnt-1
    allocate(ri(3,npart))
    allocate(vi(3,npart))

    do i=1,npart
        ! Convert position to rzphi
        xyz = birth%ri(:,i)
        call xyz_to_uvw(xyz,uvw)
        ri(1,i) = sqrt(uvw(1)*uvw(1) + uvw(2)*uvw(2))
        ri(2,i) = uvw(3)
        ri(3,i) = atan2(uvw(2),uvw(1))

        ! Convert velocity to rzphi
        v_uvw = matmul(beam_grid%basis, birth%vi(:,i))
        vi(1,i) = v_uvw(1)*cos(ri(3,i)) + v_uvw(2)*sin(ri(3,i))
        vi(2,i) = v_uvw(3)
        vi(3,i) = -v_uvw(1)*sin(ri(3,i)) + v_uvw(2)*cos(ri(3,i))
    enddo

    filename=trim(adjustl(inputs%result_dir))//"/"//trim(adjustl(inputs%runid))//"_birth.h5"

    !Open HDF5 interface
    call h5open_f(error)

    !Create file overwriting any existing file
    call h5fcreate_f(filename, H5F_ACC_TRUNC_F, fid, error)

    !Write variables
    call write_beam_grid(fid, error)
    d(1) = 1
    call h5ltmake_dataset_int_f(fid, "/n_birth", 0, d, [npart], error)
    dim4 = shape(birth%dens)
    call h5ltmake_compressed_dataset_double_f(fid,"/dens", 4, dim4, birth%dens, error)
    dim2 = [3, npart]
    call h5ltmake_compressed_dataset_double_f(fid,"/ri", 2, dim2, ri, error)
    call h5ltmake_compressed_dataset_double_f(fid,"/vi", 2, dim2, vi, error)
    call h5ltmake_compressed_dataset_int_f(fid,"/ind", 2, dim2, birth%ind, error)
    call h5ltmake_compressed_dataset_int_f(fid,"/type", 1, dim2(2:2), birth%neut_type, error)

    !Add attributes
    call h5ltset_attribute_string_f(fid, "/n_birth","description", &
         "Number of birth mc particles deposited", error)
    call h5ltset_attribute_string_f(fid, "/dens", "description", &
         "Birth density: dens(beam_component,x,y,z)", error)
    call h5ltset_attribute_string_f(fid, "/dens", "units", &
         "fast-ions/(s*cm^3)", error)
    call h5ltset_attribute_string_f(fid, "/ri", "description", &
         "Fast-ion birth position in R-Z-Phi: ri([r,z,phi],particle)", error)
    call h5ltset_attribute_string_f(fid, "/ri", "units", "cm, radians", error)
    call h5ltset_attribute_string_f(fid, "/vi", "description", &
         "Fast-ion birth velocity in R-Z-Phi: vi([r,z,phi],particle)", error)
    call h5ltset_attribute_string_f(fid, "/vi", "units", "cm/s", error)
    call h5ltset_attribute_string_f(fid, "/ind", "description", &
         "Fast-ion birth beam grid indices: ind([i,j,k],particle)", error)
    call h5ltset_attribute_string_f(fid, "/type", "description", &
         "Fast-ion birth type (1=Full, 2=Half, 3=Third)", error)

    call h5ltset_attribute_string_f(fid, "/", "coordinate_system", &
         "Cylindrical (R,Z,Phi)",error)
    call h5ltset_attribute_string_f(fid, "/", "version", version, error)
    call h5ltset_attribute_string_f(fid, "/", "description", &
         "Birth density and particles calculated by FIDASIM", error)

    !!Close file
    call h5fclose_f(fid, error)

    !!Close HDF5 interface
    call h5close_f(error)

    deallocate(ri,vi)
    if(inputs%verbose.ge.1) then
        write(*,'(T4,a,a)') 'birth profile written to: ',trim(filename)
    endif

end subroutine write_birth_profile