write_neutrals Subroutine

  1. fidasim.f90
  2. libfida
  3. write_neutrals

public subroutine write_neutrals()

Writes neut to a HDF5 file

Arguments

None

Calls

proc~~write_neutrals~~CallsGraph proc~write_neutrals write_neutrals h5fcreate_f h5fcreate_f proc~write_neutrals->h5fcreate_f proc~write_beam_grid write_beam_grid proc~write_neutrals->proc~write_beam_grid h5open_f h5open_f proc~write_neutrals->h5open_f h5ltset_attribute_string_f h5ltset_attribute_string_f proc~write_neutrals->h5ltset_attribute_string_f h5close_f h5close_f proc~write_neutrals->h5close_f h5ltmake_dataset_int_f h5ltmake_dataset_int_f proc~write_neutrals->h5ltmake_dataset_int_f interface~h5ltmake_compressed_dataset_double_f h5ltmake_compressed_dataset_double_f proc~write_neutrals->interface~h5ltmake_compressed_dataset_double_f h5fclose_f h5fclose_f proc~write_neutrals->h5fclose_f proc~write_beam_grid->h5ltset_attribute_string_f proc~write_beam_grid->interface~h5ltmake_compressed_dataset_double_f h5gclose_f h5gclose_f proc~write_beam_grid->h5gclose_f h5gcreate_f h5gcreate_f proc~write_beam_grid->h5gcreate_f proc~xyz_to_uvw xyz_to_uvw proc~write_beam_grid->proc~xyz_to_uvw proc~h5ltmake_compressed_dataset_double_f_7 h5ltmake_compressed_dataset_double_f_7 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_7 proc~h5ltmake_compressed_dataset_double_f_6 h5ltmake_compressed_dataset_double_f_6 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_6 proc~h5ltmake_compressed_dataset_double_f_5 h5ltmake_compressed_dataset_double_f_5 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_5 proc~h5ltmake_compressed_dataset_double_f_4 h5ltmake_compressed_dataset_double_f_4 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_4 proc~h5ltmake_compressed_dataset_double_f_3 h5ltmake_compressed_dataset_double_f_3 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_3 proc~h5ltmake_compressed_dataset_double_f_2 h5ltmake_compressed_dataset_double_f_2 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_2 proc~h5ltmake_compressed_dataset_double_f_1 h5ltmake_compressed_dataset_double_f_1 interface~h5ltmake_compressed_dataset_double_f->proc~h5ltmake_compressed_dataset_double_f_1 h5dwrite_f h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_7->h5dwrite_f h5dclose_f h5dclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5dclose_f h5sclose_f h5sclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5sclose_f h5ltmake_dataset_double_f h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_7->h5ltmake_dataset_double_f h5pset_chunk_f h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_chunk_f h5pcreate_f h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_7->h5pcreate_f proc~chunk_size chunk_size proc~h5ltmake_compressed_dataset_double_f_7->proc~chunk_size h5pset_deflate_f h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_deflate_f h5pset_shuffle_f h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_7->h5pset_shuffle_f h5screate_simple_f h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_7->h5screate_simple_f h5pclose_f h5pclose_f proc~h5ltmake_compressed_dataset_double_f_7->h5pclose_f h5dcreate_f h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_7->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_6->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_6->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_6->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_6->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_6->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_6->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_6->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_6->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_6->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_5->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_5->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_5->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_5->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_5->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_5->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_5->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_5->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_5->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_4->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_4->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_4->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_4->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_4->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_4->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_4->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_4->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_4->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_3->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_3->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_3->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_3->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_3->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_3->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_3->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_3->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_3->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_2->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_2->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_2->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_2->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_2->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_2->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_2->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_2->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_2->h5dcreate_f proc~h5ltmake_compressed_dataset_double_f_1->h5dwrite_f proc~h5ltmake_compressed_dataset_double_f_1->h5dclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5sclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5ltmake_dataset_double_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_chunk_f proc~h5ltmake_compressed_dataset_double_f_1->h5pcreate_f proc~h5ltmake_compressed_dataset_double_f_1->proc~chunk_size proc~h5ltmake_compressed_dataset_double_f_1->h5pset_deflate_f proc~h5ltmake_compressed_dataset_double_f_1->h5pset_shuffle_f proc~h5ltmake_compressed_dataset_double_f_1->h5screate_simple_f proc~h5ltmake_compressed_dataset_double_f_1->h5pclose_f proc~h5ltmake_compressed_dataset_double_f_1->h5dcreate_f

Called by

proc~~write_neutrals~~CalledByGraph proc~write_neutrals write_neutrals program~fidasim fidasim program~fidasim->proc~write_neutrals

Contents

Source Code

write_neutrals

Source Code

subroutine write_neutrals
    !+ Writes [[libfida:neut]] to a HDF5 file
    integer(HID_T) :: fid
    integer(HSIZE_T), dimension(4) :: dims
    integer(HSIZE_T), dimension(1) :: d
    integer :: error

    character(charlim) :: filename

    filename=trim(adjustl(inputs%result_dir))//"/"//trim(adjustl(inputs%runid))//"_neutrals.h5"

    !Open HDF5 interface
    call h5open_f(error)

    !Create file overwriting any existing file
    call h5fcreate_f(filename, H5F_ACC_TRUNC_F, fid, error)

    !Write variables
    call write_beam_grid(fid, error)
    dims = [nlevs, beam_grid%nx, beam_grid%ny, beam_grid%nz]
    d(1) =1
    call h5ltmake_dataset_int_f(fid,"/nlevel", 0, d, [nlevs], error)
    call h5ltset_attribute_string_f(fid,"/nlevel","description", &
         "Number of atomic energy levels", error)

    if(inputs%calc_nbi_dens.ge.1) then
        call h5ltmake_compressed_dataset_double_f(fid, "/fdens", 4, dims, &
             neut%full, error)
        call h5ltset_attribute_string_f(fid,"/fdens","units","neutrals*cm^-3",error)
        call h5ltmake_compressed_dataset_double_f(fid, "/hdens", 4, dims, &
             neut%half, error)
        call h5ltmake_compressed_dataset_double_f(fid, "/tdens", 4, dims, &
             neut%third, error)

        call h5ltset_attribute_string_f(fid,"/fdens","description", &
             "Neutral density for the full energy component of the beam: fdens(level,x,y,z)", error)
        call h5ltset_attribute_string_f(fid,"/hdens","description", &
             "Neutral density for the half energy component of the beam: hdens(level,x,y,z)", error)
        call h5ltset_attribute_string_f(fid,"/hdens","units","neutrals*cm^-3",error)
        call h5ltset_attribute_string_f(fid,"/tdens","description", &
             "Neutral density for the third energy component of the beam: tdens(level,x,y,z)", error)
        call h5ltset_attribute_string_f(fid,"/tdens","units","neutrals*cm^-3",error)
    endif

    if(inputs%calc_dcx_dens.ge.1) then
        call h5ltmake_compressed_dataset_double_f(fid, "/dcxdens", 4, dims, &
             neut%dcx, error)

        call h5ltset_attribute_string_f(fid,"/dcxdens","description", &
             "Direct Charge Exchange (DCX) neutral density: dcxdens(level,x,y,z)", error)
        call h5ltset_attribute_string_f(fid,"/dcxdens","units","neutrals*cm^-3",error)
    endif

    if(inputs%calc_halo_dens.ge.1) then
        call h5ltmake_compressed_dataset_double_f(fid, "/halodens", 4, dims, &
             neut%halo, error)

        call h5ltset_attribute_string_f(fid,"/halodens","description", &
             "Neutral density of the beam halo: halodens(level,x,y,z)", error)
        call h5ltset_attribute_string_f(fid,"/halodens","units","neutrals*cm^-3",error)
    endif

    call h5ltset_attribute_string_f(fid, "/", "version", version, error)
    call h5ltset_attribute_string_f(fid,"/","description", &
         "Beam neutral density calculated by FIDASIM", error)

    !Close file
    call h5fclose_f(fid, error)

    !Close HDF5 interface
    call h5close_f(error)

    if(inputs%verbose.ge.1) then
        write(*,'(T4,a,a)') 'neutral density written to: ',trim(filename)
    endif

end subroutine write_neutrals